Applications

Applications

Available Applications

The table below shows typical software installed on the work and parallel servers.

Type Name of application Versions
Work		 Versions
Parallel
Shell bash 4.2.46 4.2.46
tcsh 6.18.01 6.18.01
zsh 5.0.2 5.0.2
Terminal gnome-terminal 3.28.2 3.28.2
rxvt 9.21 -
Text Editor vi(vim) 7.4.629 7.4.629
emacs 24.3.1 1 24.3.1 1
Development
Environment		 java (OpenJDK) 1.6.0 34 1.6.0 34
1.8.0 34 1.8.0 34
Perl 5.16.3 5.16.3
Python 2.7.5 2.7.5
3.7 3 -
Ruby 2.0.0 2.0.0
PHP 5.4.16 5.4.16
CVS (Client) 1.11.23 1.11.23
Subversion (Client) 1.7.14 1.7.14
git 1.8.3.1 1.8.3.1
2.26.0 3 -
Compiler GNU(gcc) 4.8.5 4.8.5
GNU Compatible 7.5.0 -
8.3.03 -
9.3.03 -
Intel 2020 C++(icc/icpc) 3 3
Intel 2020 Fortran(ifort) 3 3
PGI C++ (pgcc/pgCC) 20.13 20.13
PGI Fortran (pgf77/pgf90/pgf95/pgfortran) 20.13 20.13
Parallel Library OpneMPI 1.10.73 1.10.7 3
Parallel Library OpneMPI 2.1.63 2.1.6 3
IntelMPI 2019 Update7 Build 202003123 2019 Update7 Build 202003123
Calculation Library Intel MK 11.3 3 11.3 3
ScaLAPACK include MKL3 include MKL3
FFTW3 (3.2, without MPI) 3.2.1 3.2.1
FFTW3 (3.3, with MPI) 3.3.42 -
FFTW3 (IntelMKL) include MKL23 include MKL23
Boost 1.53.0 1.53.0
1.72.05 -
Job Execution lsf 10.1.0.10 10.1.0.10
Misc. paps 0.6.8 0.6.8
evince (PDF viewer) 3.28.2 -
ddd 3.3.12 -
dvipdfmx 20200315 -
ghostview(gv) 3.7.4 -
ipython 1.2.1 -
ipython(python3.7) 7.12.0 3 -
cvmfs(client） 2.7.1 -
tex texlive2019 -
xerces-c 3.1.1 -
Mathematica 12.0 -
TotalView 2020.0.25 -
abinit 7.0.156 -
Ansys 2020R2 -

Mathematica

Mathematica is available on all nodes from ccw.cc.kek.jp(login.cc.kek.jp) and ccx.cc.kek.jp. If you want to execute some proccesses of Mathematica, Please use ccx.cc.kek.jp.

Start-Up Commands

The start commands for Mathematica are listed below.

  • GUI start command
$> /usr/local/bin/mathematica
  • CUI start command
$> /usr/local/bin/math
  • MathLink Template Compiler
$> /usr/local/bin/mcc

Execution

This application is offered remotely via X-forwarding. Log in using ssh with X forwarding enabled.

Here is an example of how to access Mathematica from a RedHat-based OS.

1．Log in to ccw.cc.kek.jp(or login.cc.kek.jp) enabling X forwarding (If you want to execute some processes of Mathematica, Please log in to ccx.cc.kek.jp)

[client ~]$ ssh -X ccw.cc.kek.jp
   or
[client ~]$ ssh -X ccx.cc.kek.jp

2．Start Mathematica

%> mathematica

TotalView

TotalView can be used on all nodes from work servers.

Starting TotalView

This application is offered remotely via X-forwarding. Log in using ssh with X forwarding enabled.

Here is an example of how to access TotalView from a RedHat-based OS.

1．Log in to work servers enabling X forwarding (If you want to execute some processes of TotalView, Please log in to ccx.cc.kek.jp)

[client ~]$ ssh -X ccw.cc.kek.jp
   or
[client ~]$ ssh -X ccx.cc.kek.jp

2．Launching TotalView(2020.0.25)

$> cd /usr/totalview/bin
$> totalview（GUI)

$> totalviewcli(CLI)

See TotalView Users Guide for the details.

Ansys

Ansys has been required to apply for use since October 2020. When using Ansys, please apply according to the usage information page.

  1. suspend-emacs is unavailable because there is possibility of freezing OS by using a whole CPU/memory resources on the server. ↩↩

  2. FFTW3 3.3 with MPI has been installed in /sw/packages/fftw/.( See this page for the details ). ↩↩↩

  3. When you'd like to use it, it's necessary to set a environment variables by the "module" command. ( See this page for the details ). ↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩↩

  4. OpenJDK has been installed in /usr/lib/jvm/. ↩↩↩↩

  5. boost 1.72.0 has been installed in /opt/boost-1.72.0/. ↩

  6. abinit has been installed in /sw/packages/abinit. When you'd like to use it, it's necessary to set a environment variables by the "module" command. ( See this page for the details ). ↩